| STRuster results: 82840 |
| SCOP 1.71 classification |
| Class: | Multi-domain proteins (alpha and beta) |
| Fold: | DNA/RNA polymerases |
| Superfamily: | DNA/RNA polymerases |
| Family: | Reverse transcriptase |
| Protein: | HIV-1 reverse transcriptase |
| Species: | Human immunodeficiency virus type 2 |
| Species SCOP sunid: | 82840 |
| Set description |
| Number of entries: | 2 |
| SCOP Entries: | d1mu2b_ d1mu2a2 |
| Alignment File: | 82840.alig |
| Aligned Sequences: | 82840_alig.fasta |
| Hierarchical clustering |
| Dissimilary matrix: | 82840_dissim_matrix.txt |
| Atom Distance Standard Deviation Plots |
| S matrix: Distance Standard Deviation |
| Higher resolution plot |
| S matrix |
| T matirx: Total Standard Deviation |
| Higher resolution plot |
| T matrix |
| R matrix: Relative Distance Standard Deviation |
| Higher resolution plot |
| R matrix |
| Hinges and Invariant Regions (T) |
| Hinges |
| Alignment Nr | [(83, 112), (158, 173), (187, 188), (226, 239), (282, 283), (303, 314), (329, 332), (345, 356), (377, 379), (403, 417)] |
| Uniprot Nr | [(270, 299), (345, 360), (374, 375), (413, 426), (469, 470), (490, 501), (516, 519), (532, 543), (564, 566), (590, 604)] |
| Invariant Regions |
| Region | 1 |
| Alignment Nr | [(315, 328), (333, 344), (357, 376)] |
| Uniprot Nr | [(502, 515), (520, 531), (544, 563)] |
| Superposition | 82840_superp_1.pdb.gz |
| Rasmol Script | 82840_superp_1.rsm |
| View in Jmol | |
| Region | 2 |
| Alignment Nr | [(0, 82), (113, 157)] |
| Uniprot Nr | [(187, 269), (300, 344)] |
| Superposition | 82840_superp_2.pdb.gz |
| Rasmol Script | 82840_superp_2.rsm |
| View in Jmol | |
| Region | 3 |
| Alignment Nr | [(174, 186), (189, 225)] |
| Uniprot Nr | [(361, 373), (376, 412)] |
| Superposition | 82840_superp_3.pdb.gz |
| Rasmol Script | 82840_superp_3.rsm |
| View in Jmol | |
| Region | 4 |
| Alignment Nr | [(240, 281), (284, 302)] |
| Uniprot Nr | [(427, 468), (471, 489)] |
| Superposition | - |
