STRuster

STRuster results: 81576

SCOP 1.71 classification

Class:	Alpha and beta proteins (a+b)
Fold:	Nucleotidyltransferase
Superfamily:	Nucleotidyltransferase
Family:	DNA polymerase beta-like
Protein:	DNA polymerase beta, catalytic (31 kD) fragment
Species:	Rat (Rattus norvegicus)
Species SCOP sunid:	81576

Set description

Number of entries:	5
SCOP Entries:	d1jn3a2 d1huza4 d1huob4 d1huzb4 d1huoa4
Alignment File:	81576.alig
Aligned Sequences:	81576_alig.fasta

Hierarchical clustering

Dissimilary matrix:

81576_dissim_matrix.txt

Atom Distance Standard Deviation Plots

S matrix: Distance Standard Deviation

Higher resolution plot

S matrix

T matirx: Total Standard Deviation

Higher resolution plot

T matrix

R matrix: Relative Distance Standard Deviation

Higher resolution plot

R matrix

Hinges and Invariant Regions (T)

Hinges

Alignment Nr	[(40, 40), (55, 57), (94, 98), (127, 132), (156, 158), (185, 186)]
Uniprot Nr	[(188, 188), (203, 205), (242, 246), (275, 280), (304, 306), (333, 334)]

Invariant Regions

Region	1
Alignment Nr	[(0, 39), (41, 54), (58, 93), (99, 126)]
Uniprot Nr	[(148, 187), (189, 202), (206, 241), (247, 274)]
Superposition	81576_superp_1.pdb.gz
Rasmol Script	81576_superp_1.rsm
View in Jmol
Region	2
Alignment Nr	[(0, 39), (41, 54), (99, 126), (133, 155)]
Uniprot Nr	[(148, 187), (189, 202), (247, 274), (281, 303)]
Superposition	81576_superp_2.pdb.gz
Rasmol Script	81576_superp_2.rsm
View in Jmol
Region	3
Alignment Nr	[(41, 54), (58, 93), (99, 126), (159, 184)]
Uniprot Nr	[(189, 202), (206, 241), (247, 274), (307, 332)]
Superposition	81576_superp_3.pdb.gz
Rasmol Script	81576_superp_3.rsm
View in Jmol
Region	4
Alignment Nr	[(41, 54), (99, 126), (133, 155), (159, 184)]
Uniprot Nr	[(189, 202), (247, 274), (281, 303), (307, 332)]
Superposition	-