STRuster

STRuster results: 64492

SCOP 1.71 classification

Class:	Multi-domain proteins (alpha and beta)
Fold:	beta and beta-prime subunits of DNA dependent RNA-polymerase
Superfamily:	beta and beta-prime subunits of DNA dependent RNA-polymerase
Family:	RNA-polymerase beta
Protein:	RBP2
Species:	Baker's yeast (Saccharomyces cerevisiae)
Species SCOP sunid:	64492

Set description

Number of entries:	4
SCOP Entries:	d1i6hb_ d1k83b_ d1i50b_ d1i3qb_
Alignment File:	64492.alig
Aligned Sequences:	64492_alig.fasta

Hierarchical clustering

Dissimilary matrix:

64492_dissim_matrix.txt

Atom Distance Standard Deviation Plots

S matrix: Distance Standard Deviation

Higher resolution plot

S matrix

T matirx: Total Standard Deviation

Higher resolution plot

T matrix

R matrix: Relative Distance Standard Deviation

Higher resolution plot

R matrix

Hinges and Invariant Regions (T)

Hinges

Alignment Nr	[(46, 49), (84, 88), (115, 119), (226, 233), (276, 277), (316, 330), (411, 412), (447, 448), (624, 628), (690, 695), (714, 717), (844, 867), (898, 898), (915, 916), (1089, 1091), (1108, 1111), (1133, 1135), (1200, 1206)]
Uniprot Nr	[(64, 67), (102, 106), (133, 137), (244, 251), (294, 295), (334, 348), (429, 430), (465, 466), (642, 646), (708, 713), (732, 735), (862, 885), (916, 916), (933, 934), (1107, 1109), (1126, 1129), (1151, 1153), (1218, 1224)]

Invariant Regions

Region	1
Alignment Nr	[(0, 45), (120, 225), (234, 275), (278, 315), (331, 410), (449, 623), (629, 689), (718, 843), (868, 897), (917, 1088), (1092, 1107)]
Uniprot Nr	[(18, 63), (138, 243), (252, 293), (296, 333), (349, 428), (467, 641), (647, 707), (736, 861), (886, 915), (935, 1106), (1110, 1125)]
Superposition	64492_superp_1.pdb.gz
Rasmol Script	64492_superp_1.rsm
View in Jmol
Region	2
Alignment Nr	[(0, 45), (89, 114), (120, 225), (331, 410), (449, 623), (629, 689), (718, 843), (868, 897), (917, 1088), (1092, 1107)]
Uniprot Nr	[(18, 63), (107, 132), (138, 243), (349, 428), (467, 641), (647, 707), (736, 861), (886, 915), (935, 1106), (1110, 1125)]
Superposition	64492_superp_2.pdb.gz
Rasmol Script	64492_superp_2.rsm
View in Jmol
Region	3
Alignment Nr	[(0, 45), (89, 114), (120, 225), (449, 623), (629, 689), (718, 843), (868, 897), (917, 1088), (1092, 1107), (1112, 1132)]
Uniprot Nr	[(18, 63), (107, 132), (138, 243), (467, 641), (647, 707), (736, 861), (886, 915), (935, 1106), (1110, 1125), (1130, 1150)]
Superposition	64492_superp_3.pdb.gz
Rasmol Script	64492_superp_3.rsm
View in Jmol