| STRuster results: 57506 |
| SCOP 1.71 classification |
| Class: | Small proteins |
| Fold: | Cystine-knot cytokines |
| Superfamily: | Cystine-knot cytokines |
| Family: | Platelet-derived growth factor-like |
| Protein: | Vascular endothelial growth factor, VEGF |
| Species: | Human (Homo sapiens) |
| Species SCOP sunid: | 57506 |
| Set description |
| Number of entries: | 35 |
| SCOP Entries: | d1mkgc_ d2vpfc_ d1mkka_ d2vpfd_ d1tzhw_ d1qtyr_ d1mkgd_ d1qtyw_ d1vpfc_ d1bj1w_ d2vpfa_ d1vppw_ d1vpfb_ d1fltw_ d1mkgb_ d1tziv_ d2vpfb_ d1cz8w_ d1mkga_ d2vpfg_ d1vpfd_ d1vppv_ d2vpfh_ d1vpfa_ d1qtys_ d2vpfe_ d1tzhv_ d1cz8v_ d1mjva_ d1bj1v_ d1mkkb_ d1qtyv_ d2vpff_ d1mjvb_ d1fltv_ |
| Alignment File: | 57506.alig |
| Aligned Sequences: | 57506_alig.fasta |
| Hierarchical clustering |
| Dissimilary matrix: | 57506_dissim_matrix.txt |
| Atom Distance Standard Deviation Plots |
| S matrix: Distance Standard Deviation |
| Higher resolution plot |
| S matrix |
| T matirx: Total Standard Deviation |
| Higher resolution plot |
| T matrix |
| R matrix: Relative Distance Standard Deviation |
| Higher resolution plot |
| R matrix |
| Hinges and Invariant Regions (T) |
| Hinges |
| Alignment Nr | [(0, 2), (31, 32), (49, 53), (75, 76), (96, 98)] |
| Uniprot Nr | [(38, 39), (68, 69), (86, 90), (112, 113), (133, 135)] |
| Invariant Regions |
| Region | 1 |
| Alignment Nr | [(3, 30), (33, 48), (54, 74), (77, 95)] |
| Uniprot Nr | [(40, 67), (70, 85), (91, 111), (114, 132)] |
| Superposition | 57506_superp_1.pdb.gz |
| Rasmol Script | 57506_superp_1.rsm |
| View in Jmol | |
