STRuster

STRuster results: 56722

SCOP 1.71 classification

Class:	Multi-domain proteins (alpha and beta)
Fold:	Type II DNA topoisomerase
Superfamily:	Type II DNA topoisomerase
Family:	Type II DNA topoisomerase
Protein:	DNA topoisomerase II, C-terminal fragment (residues 410-1202)
Species:	Baker's yeast (Saccharomyces cerevisiae)
Species SCOP sunid:	56722

Set description

Number of entries:	2
SCOP Entries:	d1bjt__ d1bgw__
Alignment File:	56722.alig
Aligned Sequences:	56722_alig.fasta

Hierarchical clustering

Dissimilary matrix:

56722_dissim_matrix.txt

Atom Distance Standard Deviation Plots

S matrix: Distance Standard Deviation

Higher resolution plot

S matrix

T matirx: Total Standard Deviation

Higher resolution plot

T matrix

R matrix: Relative Distance Standard Deviation

Higher resolution plot

R matrix

Hinges and Invariant Regions (T)

Hinges

Alignment Nr	[(0, 9), (27, 72), (87, 91), (102, 152), (183, 212), (262, 264), (295, 297), (315, 320), (504, 507), (603, 605), (622, 636), (648, 652), (688, 695), (724, 726), (757, 759)]
Uniprot Nr	[(419, 428), (446, 491), (506, 510), (521, 571), (602, 631), (681, 683), (714, 716), (734, 739), (923, 926), (1022, 1024), (1041, 1055), (1067, 1071), (1107, 1114), (1143, 1145), (1176, 1178)]

Invariant Regions

Region	1
Alignment Nr	[(213, 261), (265, 294), (298, 314), (321, 503), (508, 602), (637, 647), (727, 756)]
Uniprot Nr	[(632, 680), (684, 713), (717, 733), (740, 922), (927, 1021), (1056, 1066), (1146, 1175)]
Superposition	56722_superp_1.pdb.gz
Rasmol Script	56722_superp_1.rsm
View in Jmol
Region	2
Alignment Nr	[(10, 26), (73, 86), (92, 101), (213, 261)]
Uniprot Nr	[(429, 445), (492, 505), (511, 520), (632, 680)]
Superposition	56722_superp_2.pdb.gz
Rasmol Script	56722_superp_2.rsm
View in Jmol
Region	3
Alignment Nr	[(213, 261), (606, 621), (637, 647), (696, 723)]
Uniprot Nr	[(632, 680), (1025, 1040), (1056, 1066), (1115, 1142)]
Superposition	56722_superp_3.pdb.gz
Rasmol Script	56722_superp_3.rsm
View in Jmol
Region	4
Alignment Nr	[(73, 86), (153, 182), (213, 261)]
Uniprot Nr	[(492, 505), (572, 601), (632, 680)]
Superposition	-