| STRuster results: 56681 |
| SCOP 1.71 classification |
| Class: | Multi-domain proteins (alpha and beta) |
| Fold: | DNA/RNA polymerases |
| Superfamily: | DNA/RNA polymerases |
| Family: | DNA polymerase I |
| Protein: | Family B DNA polymerase |
| Species: | Bacteriophage RB69 |
| Species SCOP sunid: | 56681 |
| Set description |
| Number of entries: | 11 |
| SCOP Entries: | d1q9xa2 d1q9xd2 d1wafa2 d1q9ya2 d1ig9a2 d1clqa2 d1q9xb2 d1wafb2 d1q9xc2 d1ih7a2 d1waj_2 |
| Alignment File: | 56681.alig |
| Aligned Sequences: | 56681_alig.fasta |
| Hierarchical clustering |
| Dissimilary matrix: | 56681_dissim_matrix.txt |
| Atom Distance Standard Deviation Plots |
| S matrix: Distance Standard Deviation |
| Higher resolution plot |
| S matrix |
| T matirx: Total Standard Deviation |
| Higher resolution plot |
| T matrix |
| R matrix: Relative Distance Standard Deviation |
| Higher resolution plot |
| R matrix |
| Hinges and Invariant Regions (T) |
| Hinges |
| Alignment Nr | [(21, 22), (185, 189), (264, 267), (358, 359), (400, 401), (415, 426), (444, 452), (520, 530)] |
| Uniprot Nr | [(394, 395), (558, 562), (637, 640), (731, 732), (773, 774), (788, 799), (817, 825), (893, 903)] |
| Invariant Regions |
| Region | 1 |
| Alignment Nr | [(0, 20), (190, 263), (268, 357)] |
| Uniprot Nr | [(373, 393), (563, 636), (641, 730)] |
| Superposition | 56681_superp_1.pdb.gz |
| Rasmol Script | 56681_superp_1.rsm |
| View in Jmol | |
| Region | 2 |
| Alignment Nr | [(268, 357), (360, 399)] |
| Uniprot Nr | [(641, 730), (733, 772)] |
| Superposition | 56681_superp_2.pdb.gz |
| Rasmol Script | 56681_superp_2.rsm |
| View in Jmol | |
| Region | 3 |
| Alignment Nr | [(402, 414), (427, 443)] |
| Uniprot Nr | [(775, 787), (800, 816)] |
| Superposition | 56681_superp_3.pdb.gz |
| Rasmol Script | 56681_superp_3.rsm |
| View in Jmol | |
| Region | 4 |
| Alignment Nr | [(453, 519)] |
| Uniprot Nr | [(826, 892)] |
| Superposition | - |
