STRuster

STRuster results: 56066

SCOP 1.71 classification

Class:	Alpha and beta proteins (a+b)
Fold:	ATP-grasp
Superfamily:	Glutathione synthetase ATP-binding domain-like
Family:	ATP-binding domain of peptide synthetases
Protein:	D-alanine:D-lactate ligase VanA, C-domain
Species:	Leuconostoc mesenteroides, Ddl2
Species SCOP sunid:	56066

Set description

Number of entries:	2
SCOP Entries:	d1ehib2 d1ehia2
Alignment File:	56066.alig
Aligned Sequences:	56066_alig.fasta

Hierarchical clustering

Dissimilary matrix:

56066_dissim_matrix.txt

Atom Distance Standard Deviation Plots

S matrix: Distance Standard Deviation

Higher resolution plot

S matrix

T matirx: Total Standard Deviation

Higher resolution plot

T matrix

R matrix: Relative Distance Standard Deviation

Higher resolution plot

R matrix

Hinges and Invariant Regions (T)

Hinges

Alignment Nr	[(22, 23), (47, 54), (86, 87), (106, 110), (132, 134), (172, 175), (190, 191), (225, 235)]
Uniprot Nr	[(157, 158), (182, 189), (221, 222), (241, 245), (267, 269), (307, 310), (325, 326), (360, 370)]

Invariant Regions

Region	1
Alignment Nr	[(0, 21), (88, 105), (111, 131), (135, 171), (176, 189), (192, 224)]
Uniprot Nr	[(135, 156), (223, 240), (246, 266), (270, 306), (311, 324), (327, 359)]
Superposition	56066_superp_1.pdb.gz
Rasmol Script	56066_superp_1.rsm
View in Jmol
Region	2
Alignment Nr	[(0, 21), (24, 46), (88, 105), (111, 131), (135, 171)]
Uniprot Nr	[(135, 156), (159, 181), (223, 240), (246, 266), (270, 306)]
Superposition	56066_superp_2.pdb.gz
Rasmol Script	56066_superp_2.rsm
View in Jmol
Region	3
Alignment Nr	[(0, 21), (24, 46), (55, 85), (111, 131)]
Uniprot Nr	[(135, 156), (159, 181), (190, 220), (246, 266)]
Superposition	56066_superp_3.pdb.gz
Rasmol Script	56066_superp_3.rsm
View in Jmol