STRuster

STRuster results: 50675

SCOP 1.71 classification

Class:	All beta proteins
Fold:	Acid proteases
Superfamily:	Acid proteases
Family:	Pepsin-like
Protein:	Plasmepsin (a hemoglobin-degrading enzyme)
Species:	Plasmodium vivax
Species SCOP sunid:	50675

Set description

Number of entries:	4
SCOP Entries:	d1miqb_ d1miqa_ d1qs8b_ d1qs8a_
Alignment File:	50675.alig
Aligned Sequences:	50675_alig.fasta

Hierarchical clustering

Dissimilary matrix:

50675_dissim_matrix.txt

Atom Distance Standard Deviation Plots

S matrix: Distance Standard Deviation

Higher resolution plot

S matrix

T matirx: Total Standard Deviation

Higher resolution plot

T matrix

R matrix: Relative Distance Standard Deviation

Higher resolution plot

R matrix

Hinges and Invariant Regions (T)

Hinges

Alignment Nr	[(17, 43), (56, 83), (142, 144), (175, 183), (203, 213), (236, 239), (324, 330), (373, 374)]
Uniprot Nr	[(93, 119), (132, 159), (218, 220), (251, 259), (279, 289), (312, 315), (400, 406), (449, 450)]

Invariant Regions

Region	1
Alignment Nr	[(0, 16), (184, 202), (214, 235), (240, 323), (331, 372)]
Uniprot Nr	[(76, 92), (260, 278), (290, 311), (316, 399), (407, 448)]
Superposition	50675_superp_1.pdb.gz
Rasmol Script	50675_superp_1.rsm
View in Jmol
Region	2
Alignment Nr	[(0, 16), (84, 141), (145, 174)]
Uniprot Nr	[(76, 92), (160, 217), (221, 250)]
Superposition	50675_superp_2.pdb.gz
Rasmol Script	50675_superp_2.rsm
View in Jmol
Region	3
Alignment Nr	[(0, 16), (84, 141), (214, 235)]
Uniprot Nr	[(76, 92), (160, 217), (290, 311)]
Superposition	50675_superp_3.pdb.gz
Rasmol Script	50675_superp_3.rsm
View in Jmol
Region	4
Alignment Nr	[(0, 16), (44, 55)]
Uniprot Nr	[(76, 92), (120, 131)]
Superposition	-