STRuster

STRuster results: 50674

SCOP 1.71 classification

Class:	All beta proteins
Fold:	Acid proteases
Superfamily:	Acid proteases
Family:	Pepsin-like
Protein:	Plasmepsin (a hemoglobin-degrading enzyme)
Species:	Plasmodium falciparum, plasmepsin II
Species SCOP sunid:	50674

Set description

Number of entries:	12
SCOP Entries:	d1leea_ d1pfzb_ d1m43b_ d1me6b_ d1pfza_ d1lf3a_ d1me6a_ d1lf4a_ d1pfzd_ d1pfzc_ d1m43a_ d1lf2a_
Alignment File:	50674.alig
Aligned Sequences:	50674_alig.fasta

Hierarchical clustering

Dissimilary matrix:

50674_dissim_matrix.txt

Atom Distance Standard Deviation Plots

S matrix: Distance Standard Deviation

Higher resolution plot

S matrix

T matirx: Total Standard Deviation

Higher resolution plot

T matrix

R matrix: Relative Distance Standard Deviation

Higher resolution plot

R matrix

Hinges and Invariant Regions (T)

Hinges

Alignment Nr	[(35, 40), (54, 87), (119, 140), (154, 158), (175, 181), (204, 212), (226, 226), (278, 289), (322, 328), (373, 375)]
Uniprot Nr	[(113, 118), (132, 165), (197, 218), (232, 236), (253, 259), (282, 290), (304, 304), (356, 367), (400, 406), (451, 453)]

Invariant Regions

Region	1
Alignment Nr	[(0, 34), (182, 203), (213, 225), (227, 277), (290, 321), (329, 372)]
Uniprot Nr	[(78, 112), (260, 281), (291, 303), (305, 355), (368, 399), (407, 450)]
Superposition	50674_superp_1.pdb.gz
Rasmol Script	50674_superp_1.rsm
View in Jmol
Region	2
Alignment Nr	[(0, 34), (88, 118), (141, 153), (159, 174), (182, 203)]
Uniprot Nr	[(78, 112), (166, 196), (219, 231), (237, 252), (260, 281)]
Superposition	50674_superp_2.pdb.gz
Rasmol Script	50674_superp_2.rsm
View in Jmol
Region	3
Alignment Nr	[(0, 34), (88, 118), (141, 153), (182, 203), (213, 225)]
Uniprot Nr	[(78, 112), (166, 196), (219, 231), (260, 281), (291, 303)]
Superposition	50674_superp_3.pdb.gz
Rasmol Script	50674_superp_3.rsm
View in Jmol