| STRuster results: 49658 |
| SCOP 1.71 classification |
| Class: | All beta proteins |
| Fold: | Nucleoplasmin-like/VP (viral coat and capsid proteins) |
| Superfamily: | Group I dsDNA viruses |
| Family: | Papovaviridae-like VP |
| Protein: | Polyomavirus coat proteins |
| Species: | Murine polyoma virus, strain small-plaque 16 |
| Species SCOP sunid: | 49658 |
| Set description |
| Number of entries: | 27 |
| SCOP Entries: | d1cn3e_ d1sidc_ d1sief_ d1vpnd_ d1sidf_ d1siec_ d1vpsa_ d1vpnc_ d1cn3c_ d1vpnb_ d1side_ d1sied_ d1vpsb_ d1vpne_ d1siea_ d1cn3a_ d1sieb_ d1vpsd_ d1cn3d_ d1sidb_ d1vpse_ d1sida_ d1sidd_ d1cn3b_ d1siee_ d1vpsc_ d1vpna_ |
| Alignment File: | 49658.alig |
| Aligned Sequences: | 49658_alig.fasta |
| Hierarchical clustering |
| Dissimilary matrix: | 49658_dissim_matrix.txt |
| Atom Distance Standard Deviation Plots |
| S matrix: Distance Standard Deviation |
| Higher resolution plot |
| S matrix |
| T matirx: Total Standard Deviation |
| Higher resolution plot |
| T matrix |
| R matrix: Relative Distance Standard Deviation |
| Higher resolution plot |
| R matrix |
| Hinges and Invariant Regions (T) |
| Hinges |
| Alignment Nr | [(0, 1), (18, 27), (52, 53), (91, 94), (216, 216), (300, 305), (365, 366)] |
| Uniprot Nr | [(17, 18), (35, 44), (69, 70), (108, 111), (233, 233), (317, 322), (382, 383)] |
| Invariant Regions |
| Region | 1 |
| Alignment Nr | [(2, 17), (28, 51), (54, 90), (95, 215), (217, 299)] |
| Uniprot Nr | [(19, 34), (45, 68), (71, 107), (112, 232), (234, 316)] |
| Superposition | 49658_superp_1.pdb.gz |
| Rasmol Script | 49658_superp_1.rsm |
| View in Jmol | |
