| STRuster results: 49642 |
| SCOP 1.71 classification |
| Class: | All beta proteins |
| Fold: | Nucleoplasmin-like/VP (viral coat and capsid proteins) |
| Superfamily: | Positive stranded ssRNA viruses |
| Family: | Tymoviridae-like VP |
| Protein: | Tymovirus coat protein |
| Species: | PHMV (Physalis mottle virus) |
| Species SCOP sunid: | 49642 |
| Set description |
| Number of entries: | 6 |
| SCOP Entries: | d1e57c_ d1qjza_ d1qjzb_ d1e57a_ d1e57b_ d1qjzc_ |
| Alignment File: | 49642.alig |
| Aligned Sequences: | 49642_alig.fasta |
| Hierarchical clustering |
| Dissimilary matrix: | 49642_dissim_matrix.txt |
| Atom Distance Standard Deviation Plots |
| S matrix: Distance Standard Deviation |
| Higher resolution plot |
| S matrix |
| T matirx: Total Standard Deviation |
| Higher resolution plot |
| T matrix |
| R matrix: Relative Distance Standard Deviation |
| Higher resolution plot |
| R matrix |
| Hinges and Invariant Regions (T) |
| Hinges |
| Alignment Nr | [(0, 7), (19, 22), (41, 43), (88, 89), (111, 127), (158, 165), (182, 187)] |
| Uniprot Nr | [(1, 8), (20, 23), (42, 44), (89, 90), (112, 128), (159, 166), (183, 188)] |
| Invariant Regions |
| Region | 1 |
| Alignment Nr | [(44, 87), (90, 110), (128, 157), (166, 181)] |
| Uniprot Nr | [(45, 88), (91, 111), (129, 158), (167, 182)] |
| Superposition | 49642_superp_1.pdb.gz |
| Rasmol Script | 49642_superp_1.rsm |
| View in Jmol | |
