| STRuster results: 49429 |
| SCOP 1.71 classification |
| Class: | All beta proteins |
| Fold: | Common fold of diphtheria toxin/transcription factors/cytochrome f |
| Superfamily: | p53-like transcription factors |
| Family: | Rel/Dorsal transcription factors, DNA-binding domain |
| Protein: | p65 subunit of NF-kappa B (NFKB), N-terminal domain |
| Species: | Mouse (Mus musculus) |
| Species SCOP sunid: | 49429 |
| Set description |
| Number of entries: | 11 |
| SCOP Entries: | d1le9e2 d1le5e2 d1ikna2 d1ramb2 d1rama2 d1le9a2 d2rama2 d1vkxa2 d2ramb2 d1le5a2 d1leia2 |
| Alignment File: | 49429.alig |
| Aligned Sequences: | 49429_alig.fasta |
| Hierarchical clustering |
| Dissimilary matrix: | 49429_dissim_matrix.txt |
| Atom Distance Standard Deviation Plots |
| S matrix: Distance Standard Deviation |
| Higher resolution plot |
| S matrix |
| T matirx: Total Standard Deviation |
| Higher resolution plot |
| T matrix |
| R matrix: Relative Distance Standard Deviation |
| Higher resolution plot |
| R matrix |
| Hinges and Invariant Regions (T) |
| Hinges |
| Alignment Nr | [(0, 49), (88, 92), (128, 134), (151, 154), (170, 175)] |
| Uniprot Nr | [(19, 65), (104, 108), (144, 150), (167, 170), (186, 191)] |
| Invariant Regions |
| Region | 1 |
| Alignment Nr | [(50, 87), (93, 127), (135, 150), (155, 169)] |
| Uniprot Nr | [(66, 103), (109, 143), (151, 166), (171, 185)] |
| Superposition | 49429_superp_1.pdb.gz |
| Rasmol Script | 49429_superp_1.rsm |
| View in Jmol | |
