| STRuster results: 49425 |
| SCOP 1.71 classification |
| Class: | All beta proteins |
| Fold: | Common fold of diphtheria toxin/transcription factors/cytochrome f |
| Superfamily: | p53-like transcription factors |
| Family: | Rel/Dorsal transcription factors, DNA-binding domain |
| Protein: | p50 subunit of NF-kappa B (NFKB), N-terminal domain |
| Species: | Mouse (Mus musculus) |
| Species SCOP sunid: | 49425 |
| Set description |
| Number of entries: | 10 |
| SCOP Entries: | d1nfkb2 d1le5b2 d1nfka2 d1ooaa2 d1leib2 d1vkxb2 d1le9f2 d1le5f2 d1ooab2 d1le9b2 |
| Alignment File: | 49425.alig |
| Aligned Sequences: | 49425_alig.fasta |
| Hierarchical clustering |
| Dissimilary matrix: | 49425_dissim_matrix.txt |
| Atom Distance Standard Deviation Plots |
| S matrix: Distance Standard Deviation |
| Higher resolution plot |
| S matrix |
| T matirx: Total Standard Deviation |
| Higher resolution plot |
| T matrix |
| R matrix: Relative Distance Standard Deviation |
| Higher resolution plot |
| R matrix |
| Hinges and Invariant Regions (T) |
| Hinges |
| Alignment Nr | [(0, 11), (23, 52), (64, 90), (118, 137), (148, 155), (166, 167), (182, 190), (205, 213)] |
| Uniprot Nr | [(38, 48), (60, 89), (101, 127), (155, 174), (185, 192), (203, 204), (219, 227), (242, 250)] |
| Invariant Regions |
| Region | 1 |
| Alignment Nr | [(12, 22), (53, 63), (91, 117), (168, 181), (191, 204)] |
| Uniprot Nr | [(49, 59), (90, 100), (128, 154), (205, 218), (228, 241)] |
| Superposition | 49425_superp_1.pdb.gz |
| Rasmol Script | 49425_superp_1.rsm |
| View in Jmol | |
| Region | 2 |
| Alignment Nr | [(12, 22), (91, 117), (156, 165), (168, 181), (191, 204)] |
| Uniprot Nr | [(49, 59), (128, 154), (193, 202), (205, 218), (228, 241)] |
| Superposition | 49425_superp_2.pdb.gz |
| Rasmol Script | 49425_superp_2.rsm |
| View in Jmol | |
