| STRuster results: 48444 |
| SCOP 1.71 classification |
| Class: | All alpha proteins |
| Fold: | alpha-alpha superhelix |
| Superfamily: | Protein prenylyltransferase |
| Family: | Protein prenylyltransferase |
| Protein: | Rab geranylgeranyltransferase alpha-subunit, N-terminal domain |
| Species: | Rat (Rattus norvegicus) |
| Species SCOP sunid: | 48444 |
| Set description |
| Number of entries: | 3 |
| SCOP Entries: | d1dcec1 d1ltxa1 d1dcea1 |
| Alignment File: | 48444.alig |
| Aligned Sequences: | 48444_alig.fasta |
| Hierarchical clustering |
| Dissimilary matrix: | 48444_dissim_matrix.txt |
| Atom Distance Standard Deviation Plots |
| S matrix: Distance Standard Deviation |
| Higher resolution plot |
| S matrix |
| T matirx: Total Standard Deviation |
| Higher resolution plot |
| T matrix |
| R matrix: Relative Distance Standard Deviation |
| Higher resolution plot |
| R matrix |
| Hinges and Invariant Regions (T) |
| Hinges |
| Alignment Nr | [(0, 28), (75, 82), (121, 122), (163, 175), (191, 193), (235, 239), (350, 352)] |
| Uniprot Nr | [(1, 29), (76, 83), (122, 123), (164, 176), (192, 194), (236, 240), (351, 353)] |
| Invariant Regions |
| Region | 1 |
| Alignment Nr | [(29, 74), (83, 120), (123, 162), (176, 190), (194, 234), (353, 442)] |
| Uniprot Nr | [(30, 75), (84, 121), (124, 163), (177, 191), (195, 235), (354, 443)] |
| Superposition | 48444_superp_1.pdb.gz |
| Rasmol Script | 48444_superp_1.rsm |
| View in Jmol | |
| Region | 2 |
| Alignment Nr | [(29, 74), (83, 120), (123, 162), (240, 349)] |
| Uniprot Nr | [(30, 75), (84, 121), (124, 163), (241, 350)] |
| Superposition | 48444_superp_2.pdb.gz |
| Rasmol Script | 48444_superp_2.rsm |
| View in Jmol | |
