STRuster

 STRuster results: 117741

 SCOP 1.71 classification
Class: Alpha and beta proteins (a/b)
Fold: Periplasmic binding protein-like I
Superfamily: Periplasmic binding protein-like I
Family: L-arabinose binding protein-like
Protein: Glucose-resistance amylase regulator CcpA, C-terminal domain
Species: Bacillus megaterium
Species SCOP sunid: 117741

 Set description
Number of entries: 22
SCOP Entries: d1sxim_ d1rzra2 d1sxgb_ d1sxga_ d1sxid_ d1sxik_ d1sxgi_ d1rzrg2 d1rzrd2 d1sxin_ d1sxir_ d1sxgd_ d1sxiw_ d1sxii_ d1sxia_ d1sxil_ d1sxgf_ d1sxgp_ d1rzrc2 d1sxig_ d1sxib_ d1sxit_
Alignment File: 117741.alig
Aligned Sequences: 117741_alig.fasta

 Hierarchical clustering
Dendrogram

Dissimilary matrix: 117741_dissim_matrix.txt

 Atom Distance Standard Deviation Plots
 S matrix: Distance Standard Deviation
distance standard deviation
Higher resolution plot
S matrix

 T matirx: Total Standard Deviation
distance+sus standard deviation
Higher resolution plot
T matrix

 R matrix: Relative Distance Standard Deviation
relative distance standard deviation
Higher resolution plot
R matrix

 Hinges and Invariant Regions (T)
 Hinges
Alignment Nr[(0, 78), (95, 95), (154, 155), (173, 182), (195, 196), (210, 212), (228, 229), (240, 243), (263, 265), (281, 282)]
Uniprot Nr [(58, 133), (150, 150), (209, 210), (228, 237), (249, 250), (264, 266), (281, 282), (293, 295), (313, 315), (331, 332)]

 Invariant Regions
Region1
Alignment Nr[(96, 153), (156, 172), (183, 194), (197, 209), (213, 227), (230, 239), (244, 262), (266, 280)]
Uniprot Nr[(151, 208), (211, 227), (238, 249), (251, 263), (267, 281), (283, 292), (296, 312), (316, 330)]
Superposition117741_superp_1.pdb.gz
Rasmol Script117741_superp_1.rsm
View in Jmol
 
Region2
Alignment Nr[(79, 94), (96, 153), (213, 227), (230, 239), (244, 262), (266, 280)]
Uniprot Nr[(134, 149), (151, 208), (267, 281), (283, 292), (296, 312), (316, 330)]
Superposition117741_superp_2.pdb.gz
Rasmol Script117741_superp_2.rsm
View in Jmol