| STRuster results: 117118 |
| SCOP 1.71 classification |
| Class: | All beta proteins |
| Fold: | TNF-like |
| Superfamily: | TNF-like |
| Family: | TNF-like |
| Protein: | A proliferation-inducing ligand, APRIL |
| Species: | Mouse (Mus musculus) |
| Species SCOP sunid: | 117118 |
| Set description |
| Number of entries: | 11 |
| SCOP Entries: | d1u5yd_ d1u5ya_ d1xu2d_ d1xu1a_ d1u5za_ d1xu2a_ d1xu1d_ d1xu2b_ d1xu1b_ d1u5xa_ d1u5yb_ |
| Alignment File: | 117118.alig |
| Aligned Sequences: | 117118_alig.fasta |
| Hierarchical clustering |
| Dissimilary matrix: | 117118_dissim_matrix.txt |
| Atom Distance Standard Deviation Plots |
| S matrix: Distance Standard Deviation |
| Higher resolution plot |
| S matrix |
| T matirx: Total Standard Deviation |
| Higher resolution plot |
| T matrix |
| R matrix: Relative Distance Standard Deviation |
| Higher resolution plot |
| R matrix |
| Hinges and Invariant Regions (T) |
| Hinges |
| Alignment Nr | [(12, 16), (60, 61)] |
| Uniprot Nr | [(117, 121), (165, 166)] |
| Invariant Regions |
| Region | 1 |
| Alignment Nr | [(0, 11), (17, 59), (62, 136)] |
| Uniprot Nr | [(105, 116), (122, 164), (167, 241)] |
| Superposition | 117118_superp_1.pdb.gz |
| Rasmol Script | 117118_superp_1.rsm |
| View in Jmol | |
