STRuster

STRuster results: 111302

SCOP 1.71 classification

Class:	Multi-domain proteins (alpha and beta)
Fold:	DNA/RNA polymerases
Superfamily:	DNA/RNA polymerases
Family:	RNA-dependent RNA-polymerase
Protein:	Viral RNA polymerase
Species:	Foot-and-mouth disease virus
Species SCOP sunid:	111302

Set description

Number of entries:	2
SCOP Entries:	d1wnea_ d1u09a_
Alignment File:	111302.alig
Aligned Sequences:	111302_alig.fasta

Hierarchical clustering

Dissimilary matrix:

111302_dissim_matrix.txt

Atom Distance Standard Deviation Plots

S matrix: Distance Standard Deviation

Higher resolution plot

S matrix

T matirx: Total Standard Deviation

Higher resolution plot

T matrix

R matrix: Relative Distance Standard Deviation

Higher resolution plot

R matrix

Hinges and Invariant Regions (T)

Hinges

Alignment Nr	[(0, 18), (39, 48), (59, 60), (111, 112), (135, 140), (284, 285), (296, 297), (369, 371), (415, 416), (468, 475)]
Uniprot Nr	[(1858, 1876), (1897, 1906), (1917, 1918), (1969, 1970), (1993, 1998), (2142, 2143), (2154, 2155), (2227, 2229), (2273, 2274), (2326, 2327)]

Invariant Regions

Region	1
Alignment Nr	[(19, 38), (49, 58), (61, 110), (141, 283), (286, 295), (298, 368), (372, 414), (417, 467)]
Uniprot Nr	[(1877, 1896), (1907, 1916), (1919, 1968), (1999, 2141), (2144, 2153), (2156, 2226), (2230, 2272), (2275, 2325)]
Superposition	111302_superp_1.pdb.gz
Rasmol Script	111302_superp_1.rsm
View in Jmol
Region	2
Alignment Nr	[(19, 38), (61, 110), (113, 134), (141, 283), (286, 295), (298, 368), (372, 414), (417, 467)]
Uniprot Nr	[(1877, 1896), (1919, 1968), (1971, 1992), (1999, 2141), (2144, 2153), (2156, 2226), (2230, 2272), (2275, 2325)]
Superposition	111302_superp_2.pdb.gz
Rasmol Script	111302_superp_2.rsm
View in Jmol