STRuster

STRuster results: 103415

SCOP 1.71 classification

Class:	Multi-domain proteins (alpha and beta)
Fold:	Reovirus inner layer core protein p3
Superfamily:	Reovirus inner layer core protein p3
Family:	Phytoreovirus core
Protein:	RDV p3
Species:	Rice dwarf virus
Species SCOP sunid:	103415

Set description

Number of entries:	2
SCOP Entries:	d1uf2a_ d1uf2b_
Alignment File:	103415.alig
Aligned Sequences:	103415_alig.fasta

Hierarchical clustering

Dissimilary matrix:

103415_dissim_matrix.txt

Atom Distance Standard Deviation Plots

S matrix: Distance Standard Deviation

Higher resolution plot

S matrix

T matirx: Total Standard Deviation

Higher resolution plot

T matrix

R matrix: Relative Distance Standard Deviation

Higher resolution plot

R matrix

Hinges and Invariant Regions (T)

Hinges

Alignment Nr	[(48, 58), (85, 86), (102, 133), (161, 162), (174, 175), (203, 204), (233, 240), (259, 262), (281, 306), (323, 344), (438, 449), (497, 497), (516, 534), (545, 547), (604, 625), (651, 665), (689, 707), (721, 723), (739, 760), (931, 938), (980, 981), (992, 1005)]
Uniprot Nr	[(49, 59), (86, 87), (103, 134), (162, 163), (175, 176), (204, 205), (234, 241), (260, 263), (282, 307), (324, 345), (439, 450), (498, 498), (517, 535), (546, 548), (605, 626), (652, 666), (690, 708), (722, 724), (740, 761), (932, 939), (981, 982), (993, 1006)]

Invariant Regions

Region	1
Alignment Nr	[(0, 47), (59, 84), (87, 101), (134, 160), (163, 173), (176, 202), (205, 232), (263, 280), (939, 979), (982, 991)]
Uniprot Nr	[(1, 48), (60, 85), (88, 102), (135, 161), (164, 174), (177, 203), (206, 233), (264, 281), (940, 980), (983, 992)]
Superposition	103415_superp_1.pdb.gz
Rasmol Script	103415_superp_1.rsm
View in Jmol
Region	2
Alignment Nr	[(0, 47), (59, 84), (87, 101), (134, 160), (163, 173), (176, 202), (205, 232), (241, 258), (263, 280), (982, 991)]
Uniprot Nr	[(1, 48), (60, 85), (88, 102), (135, 161), (164, 174), (177, 203), (206, 233), (242, 259), (264, 281), (983, 992)]
Superposition	103415_superp_2.pdb.gz
Rasmol Script	103415_superp_2.rsm
View in Jmol
Region	3
Alignment Nr	[(0, 47), (59, 84), (87, 101), (134, 160), (163, 173), (176, 202), (761, 930), (939, 979)]
Uniprot Nr	[(1, 48), (60, 85), (88, 102), (135, 161), (164, 174), (177, 203), (762, 931), (940, 980)]
Superposition	103415_superp_3.pdb.gz
Rasmol Script	103415_superp_3.rsm
View in Jmol
Region	4
Alignment Nr	[(0, 47), (307, 322), (345, 437), (450, 496), (498, 515), (535, 544), (548, 603), (626, 650)]
Uniprot Nr	[(1, 48), (308, 323), (346, 438), (451, 497), (499, 516), (536, 545), (549, 604), (627, 651)]
Superposition	-
Region	5
Alignment Nr	[(0, 47), (307, 322), (498, 515), (535, 544), (548, 603), (626, 650), (708, 720)]
Uniprot Nr	[(1, 48), (308, 323), (499, 516), (536, 545), (549, 604), (627, 651), (709, 721)]
Superposition	-
Region	6
Alignment Nr	[(0, 47), (87, 101), (535, 544), (666, 688), (708, 720), (724, 738)]
Uniprot Nr	[(1, 48), (88, 102), (536, 545), (667, 689), (709, 721), (725, 739)]
Superposition	-
Region	7
Alignment Nr	[(0, 47), (307, 322), (535, 544), (666, 688), (708, 720), (724, 738)]
Uniprot Nr	[(1, 48), (308, 323), (536, 545), (667, 689), (709, 721), (725, 739)]
Superposition	-
Region	8
Alignment Nr	[(0, 47), (59, 84), (87, 101), (535, 544)]
Uniprot Nr	[(1, 48), (60, 85), (88, 102), (536, 545)]
Superposition	-
Region	9
Alignment Nr	[(0, 47), (87, 101), (163, 173), (724, 738)]
Uniprot Nr	[(1, 48), (88, 102), (164, 174), (725, 739)]
Superposition	-
Region	10
Alignment Nr	[(0, 47), (134, 160), (498, 515), (982, 991)]
Uniprot Nr	[(1, 48), (135, 161), (499, 516), (983, 992)]
Superposition	-
Region	11
Alignment Nr	[(0, 47), (450, 496), (498, 515), (982, 991)]
Uniprot Nr	[(1, 48), (451, 497), (499, 516), (983, 992)]
Superposition	-
Region	12
Alignment Nr	[(0, 47), (1006, 1018)]
Uniprot Nr	[(1, 48), (1007, 1019)]
Superposition	-