STRuster

STRuster results: 90130

SCOP 1.71 classification

Class:	Membrane and cell surface proteins and peptides
Fold:	Transmembrane beta-barrels
Superfamily:	Porins
Family:	Ligand-gated protein channel
Protein:	Outer membrane cobalamin transporter BtuB
Species:	Escherichia coli
Species SCOP sunid:	90130

Set description

Number of entries:	5
SCOP Entries:	d1nqfa_ d1ujwa_ d1nqha_ d1nqea_ d1nqga_
Alignment File:	90130.alig
Aligned Sequences:	90130_alig.fasta

Hierarchical clustering

Dissimilary matrix:

90130_dissim_matrix.txt

Atom Distance Standard Deviation Plots

S matrix: Distance Standard Deviation

Higher resolution plot

S matrix

T matirx: Total Standard Deviation

Higher resolution plot

T matrix

R matrix: Relative Distance Standard Deviation

Higher resolution plot

R matrix

Hinges and Invariant Regions (T)

Hinges

Alignment Nr	[(0, 2), (82, 89), (157, 158), (171, 173), (184, 192), (226, 233), (273, 282), (314, 317), (329, 332), (405, 406), (447, 448), (519, 520), (535, 535), (546, 547)]
Uniprot Nr	[(24, 26), (106, 113), (181, 182), (195, 197), (208, 216), (250, 257), (297, 306), (336, 338), (349, 352), (425, 426), (467, 468), (537, 538), (552, 552), (562, 563)]

Invariant Regions

Region	1
Alignment Nr	[(3, 81), (90, 156), (159, 170), (174, 183), (193, 225), (234, 272), (283, 313), (318, 328), (333, 404), (407, 446), (449, 518), (521, 534), (548, 598)]
Uniprot Nr	[(27, 105), (114, 180), (183, 194), (198, 207), (217, 249), (258, 296), (307, 336), (338, 348), (353, 424), (427, 466), (469, 537), (538, 551), (564, 614)]
Superposition	90130_superp_1.pdb.gz
Rasmol Script	90130_superp_1.rsm
View in Jmol
Region	2
Alignment Nr	[(3, 81), (90, 156), (159, 170), (333, 404), (407, 446), (449, 518), (521, 534), (536, 545), (548, 598)]
Uniprot Nr	[(27, 105), (114, 180), (183, 194), (353, 424), (427, 466), (469, 537), (538, 551), (553, 561), (564, 614)]
Superposition	90130_superp_2.pdb.gz
Rasmol Script	90130_superp_2.rsm
View in Jmol