| STRuster results: 89229 |
| SCOP 1.71 classification |
| Class: | All beta proteins |
| Fold: | Nucleoplasmin-like/VP (viral coat and capsid proteins) |
| Superfamily: | Positive stranded ssRNA viruses |
| Family: | Tombusviridae-like VP |
| Protein: | Carmovirus coat protein |
| Species: | CMV (Carnation mottle virus) |
| Species SCOP sunid: | 89229 |
| Set description |
| Number of entries: | 3 |
| SCOP Entries: | d1opoc_ d1opob_ d1opoa_ |
| Alignment File: | 89229.alig |
| Aligned Sequences: | 89229_alig.fasta |
| Hierarchical clustering |
| Dissimilary matrix: | 89229_dissim_matrix.txt |
| Atom Distance Standard Deviation Plots |
| S matrix: Distance Standard Deviation |
| Higher resolution plot |
| S matrix |
| T matirx: Total Standard Deviation |
| Higher resolution plot |
| T matrix |
| R matrix: Relative Distance Standard Deviation |
| Higher resolution plot |
| R matrix |
| Hinges and Invariant Regions (T) |
| Hinges |
| Alignment Nr | [(11, 38), (63, 66), (100, 101), (142, 148), (159, 160), (172, 176)] |
| Uniprot Nr | [(92, 119), (144, 147), (181, 182), (223, 229), (240, 241), (253, 257)] |
| Invariant Regions |
| Region | 1 |
| Alignment Nr | [(0, 10), (39, 62), (67, 99), (102, 141), (149, 158)] |
| Uniprot Nr | [(81, 91), (120, 143), (148, 180), (183, 222), (230, 239)] |
| Superposition | 89229_superp_1.pdb.gz |
| Rasmol Script | 89229_superp_1.rsm |
| View in Jmol | |
| Region | 2 |
| Alignment Nr | [(0, 10), (39, 62), (67, 99), (149, 158), (161, 171)] |
| Uniprot Nr | [(81, 91), (120, 143), (148, 180), (230, 239), (242, 252)] |
| Superposition | 89229_superp_2.pdb.gz |
| Rasmol Script | 89229_superp_2.rsm |
| View in Jmol | |
| Region | 3 |
| Alignment Nr | [(0, 10), (149, 158), (161, 171), (177, 267)] |
| Uniprot Nr | [(81, 91), (230, 239), (242, 252), (258, 348)] |
| Superposition | 89229_superp_3.pdb.gz |
| Rasmol Script | 89229_superp_3.rsm |
| View in Jmol | |
