STRuster

 STRuster results: 88997

 SCOP 1.71 classification
Class: All alpha proteins
Fold: RuvA C-terminal domain-like
Superfamily: UBA-like
Family: CUE domain
Protein: Vacuolar protein sorting-associated protein vps9
Species: Baker's yeast (Saccharomyces cerevisiae)
Species SCOP sunid: 88997

 Set description
Number of entries: 3
SCOP Entries: d1p3qq_ d1mn3a_ d1p3qr_
Alignment File: 88997.alig
Aligned Sequences: 88997_alig.fasta

 Hierarchical clustering
Dendrogram

Dissimilary matrix: 88997_dissim_matrix.txt

 Atom Distance Standard Deviation Plots
 S matrix: Distance Standard Deviation
distance standard deviation
Higher resolution plot
S matrix

 T matirx: Total Standard Deviation
distance+sus standard deviation
Higher resolution plot
T matrix

 R matrix: Relative Distance Standard Deviation
relative distance standard deviation
Higher resolution plot
R matrix

 Hinges and Invariant Regions (T)
 Hinges
Alignment Nr[(19, 20), (32, 55)]
Uniprot Nr [(417, 418), (428, 451)]

 Invariant Regions
Region1
Alignment Nr[(0, 18), (21, 31)]
Uniprot Nr[(398, 416), (418, 427)]
Superposition88997_superp_1.pdb.gz
Rasmol Script88997_superp_1.rsm
View in Jmol