STRuster

 STRuster results: 88974

 SCOP 1.71 classification
Class: All alpha proteins
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: Homeodomain-like
Family: Tetracyclin repressor-like, N-terminal domain
Protein: Hypothetical transcriptional regulator YcdC
Species: Escherichia coli
Species SCOP sunid: 88974

 Set description
Number of entries: 4
SCOP Entries: d1pb6d1 d1pb6c1 d1pb6b1 d1pb6a1
Alignment File: 88974.alig
Aligned Sequences: 88974_alig.fasta

 Hierarchical clustering
Dendrogram

Dissimilary matrix: 88974_dissim_matrix.txt

 Atom Distance Standard Deviation Plots
 S matrix: Distance Standard Deviation
distance standard deviation
Higher resolution plot
S matrix

 T matirx: Total Standard Deviation
distance+sus standard deviation
Higher resolution plot
T matrix

 R matrix: Relative Distance Standard Deviation
relative distance standard deviation
Higher resolution plot
R matrix

 Hinges and Invariant Regions (T)
 Hinges
Alignment Nr[(0, 6)]
Uniprot Nr [(15, 21)]

 Invariant Regions
Region1
Alignment Nr[(7, 71)]
Uniprot Nr[(22, 86)]
Superposition88974_superp_1.pdb.gz
Rasmol Script88974_superp_1.rsm
View in Jmol