STRuster

 STRuster results: 88893

 SCOP 1.71 classification
Class: All alpha proteins
Fold: Left-handed superhelix
Superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family: C-terminal domain of alpha and beta subunits of F1 ATP synthase
Protein: F1 ATP synthase alpha subunit, domain 3
Species: Cow (Bos taurus)
Species SCOP sunid: 88893

 Set description
Number of entries: 33
SCOP Entries: d1w0jc1 d1w0kc1 d1ohhc1 d1h8ha1 d1e1rb1 d1e1qa1 d1cowb1 d1efra1 d1e79c1 d1e1ra1 d1w0ja1 d1efrb1 d1h8hc1 d1e1qc1 d1w0jb1 d1ohhb1 d1h8ec1 d1e79a1 d1e1rc1 d1nbmc1 d1e79b1 d1h8ea1 d1nbma1 d1cowc1 d1w0ka1 d1ohha1 d1h8eb1 d1nbmb1 d1w0kb1 d1efrc1 d1h8hb1 d1e1qb1 d1cowa1
Alignment File: 88893.alig
Aligned Sequences: 88893_alig.fasta

 Hierarchical clustering
Dendrogram

Dissimilary matrix: 88893_dissim_matrix.txt

 Atom Distance Standard Deviation Plots
 S matrix: Distance Standard Deviation
distance standard deviation
Higher resolution plot
S matrix

 T matirx: Total Standard Deviation
distance+sus standard deviation
Higher resolution plot
T matrix

 R matrix: Relative Distance Standard Deviation
relative distance standard deviation
Higher resolution plot
R matrix

 Hinges and Invariant Regions (T)
 Hinges
Alignment Nr[(0, 33), (106, 107), (128, 130)]
Uniprot Nr [(423, 456), (529, 530), (551, 553)]

 Invariant Regions
Region1
Alignment Nr[(34, 105), (108, 127)]
Uniprot Nr[(457, 528), (531, 550)]
Superposition88893_superp_1.pdb.gz
Rasmol Script88893_superp_1.rsm
View in Jmol