STRuster

 STRuster results: 69891

 SCOP 1.71 classification
Class: Multi-domain proteins (alpha and beta)
Fold: Prokaryotic type I DNA topoisomerase
Superfamily: Prokaryotic type I DNA topoisomerase
Family: Prokaryotic type I DNA topoisomerase
Protein: Topoisomerase "domain" of reverse gyrase
Species: Archaeon Archaeoglobus fulgidus
Species SCOP sunid: 69891

 Set description
Number of entries: 3
SCOP Entries: d1gkub3 d1gl9c3 d1gl9b3
Alignment File: 69891.alig
Aligned Sequences: 69891_alig.fasta

 Hierarchical clustering
Dendrogram

Dissimilary matrix: 69891_dissim_matrix.txt

 Atom Distance Standard Deviation Plots
 S matrix: Distance Standard Deviation
distance standard deviation
Higher resolution plot
S matrix

 T matirx: Total Standard Deviation
distance+sus standard deviation
Higher resolution plot
T matrix

 R matrix: Relative Distance Standard Deviation
relative distance standard deviation
Higher resolution plot
R matrix

 Hinges and Invariant Regions (T)
 Hinges
Alignment Nr[(62, 83), (107, 109), (148, 149), (194, 218), (230, 231), (249, 249), (267, 270), (331, 344), (397, 433), (448, 453), (492, 555)]
Uniprot Nr [(561, 582), (606, 608), (647, 648), (693, 717), (729, 730), (748, 748), (766, 769), (830, 843), (896, 932), (947, 952), (991, 1054)]

 Invariant Regions
Region1
Alignment Nr[(0, 61), (110, 147), (150, 193), (219, 229), (271, 330), (345, 396), (454, 491)]
Uniprot Nr[(499, 560), (609, 646), (649, 692), (718, 728), (770, 829), (844, 895), (953, 990)]
Superposition69891_superp_1.pdb.gz
Rasmol Script69891_superp_1.rsm
View in Jmol