STRuster

 STRuster results: 69363

 SCOP 1.71 classification
Class: All beta proteins
Fold: beta-hairpin stack
Superfamily: Cell wall binding repeat
Family: Cell wall binding repeat
Protein: Choline binding domain of autolysin C-LytA
Species: Streptococcus pneumoniae
Species SCOP sunid: 69363

 Set description
Number of entries: 10
SCOP Entries: d1gvma_ d1h8ga_ d1gvmd_ d1gvmc_ d1gvmf_ d1gvme_ d1h8gb_ d1hcxa_ d1hcxb_ d1gvmb_
Alignment File: 69363.alig
Aligned Sequences: 69363_alig.fasta

 Hierarchical clustering
Dendrogram

Dissimilary matrix: 69363_dissim_matrix.txt

 Atom Distance Standard Deviation Plots
 S matrix: Distance Standard Deviation
distance standard deviation
Higher resolution plot
S matrix

 T matirx: Total Standard Deviation
distance+sus standard deviation
Higher resolution plot
T matrix

 R matrix: Relative Distance Standard Deviation
relative distance standard deviation
Higher resolution plot
R matrix

 Hinges and Invariant Regions (T)
 Hinges
Alignment Nr[(0, 29), (40, 51), (124, 138)]
Uniprot Nr [(187, 212), (223, 234), (304, 318)]

 Invariant Regions
Region1
Alignment Nr[(30, 39), (52, 123)]
Uniprot Nr[(213, 222), (235, 303)]
Superposition69363_superp_1.pdb.gz
Rasmol Script69363_superp_1.rsm
View in Jmol