STRuster

STRuster results: 63692

SCOP 1.71 classification

Class:	All beta proteins
Fold:	Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:	Positive stranded ssRNA viruses
Family:	Caliciviridae-like VP
Protein:	Calicivirus capsid protein
Species:	Norwalk virus
Species SCOP sunid:	63692

Set description

Number of entries:	3
SCOP Entries:	d1ihmb_ d1ihma_ d1ihmc_
Alignment File:	63692.alig
Aligned Sequences:	63692_alig.fasta

Hierarchical clustering

Dissimilary matrix:

63692_dissim_matrix.txt

Atom Distance Standard Deviation Plots

S matrix: Distance Standard Deviation

Higher resolution plot

S matrix

T matirx: Total Standard Deviation

Higher resolution plot

T matrix

R matrix: Relative Distance Standard Deviation

Higher resolution plot

R matrix

Hinges and Invariant Regions (T)

Hinges

Alignment Nr	[(19, 21), (51, 52), (72, 80), (96, 97), (116, 120), (150, 152), (163, 168), (197, 199), (497, 510)]
Uniprot Nr	[(29, 31), (61, 62), (82, 90), (106, 107), (126, 130), (160, 162), (173, 178), (207, 209), (507, 520)]

Invariant Regions

Region	1
Alignment Nr	[(0, 18), (22, 50), (53, 71), (98, 115), (121, 149), (153, 162), (169, 196)]
Uniprot Nr	[(10, 28), (32, 60), (63, 81), (108, 125), (131, 159), (163, 172), (179, 206)]
Superposition	63692_superp_1.pdb.gz
Rasmol Script	63692_superp_1.rsm
View in Jmol
Region	2
Alignment Nr	[(0, 18), (22, 50), (81, 95), (98, 115), (121, 149), (153, 162)]
Uniprot Nr	[(10, 28), (32, 60), (91, 105), (108, 125), (131, 159), (163, 172)]
Superposition	63692_superp_2.pdb.gz
Rasmol Script	63692_superp_2.rsm
View in Jmol
Region	3
Alignment Nr	[(0, 18), (22, 50), (81, 95), (200, 496)]
Uniprot Nr	[(10, 28), (32, 60), (91, 105), (210, 506)]
Superposition	63692_superp_3.pdb.gz
Rasmol Script	63692_superp_3.rsm
View in Jmol