STRuster

STRuster results: 56819

SCOP 1.71 classification

Class:	Multi-domain proteins (alpha and beta)
Fold:	Sec1/munc18-like (SM) proteins
Superfamily:	Sec1/munc18-like (SM) proteins
Family:	Sec1/munc18-like (SM) proteins
Protein:	Neuronal Sec1, NSec1
Species:	Longfin inshore squid (Loligo pealei)
Species SCOP sunid:	56819

Set description

Number of entries:	4
SCOP Entries:	d1fvfa_ d1epua_ d1fvfb_ d1fvha_
Alignment File:	56819.alig
Aligned Sequences:	56819_alig.fasta

Hierarchical clustering

Dissimilary matrix:

56819_dissim_matrix.txt

Atom Distance Standard Deviation Plots

S matrix: Distance Standard Deviation

Higher resolution plot

S matrix

T matirx: Total Standard Deviation

Higher resolution plot

T matrix

R matrix: Relative Distance Standard Deviation

Higher resolution plot

R matrix

Hinges and Invariant Regions (T)

Hinges

Alignment Nr	[(0, 64), (78, 133), (218, 225), (253, 254), (268, 269), (293, 295), (306, 315), (334, 350), (361, 362), (388, 408), (452, 470), (482, 490), (520, 523), (578, 580), (607, 608)]
Uniprot Nr	[(2, 61), (75, 129), (214, 220), (248, 248), (262, 263), (287, 288), (299, 308), (327, 341), (352, 352), (377, 396), (440, 457), (469, 476), (504, 507), (561, 563), (590, 591)]

Invariant Regions

Region	1
Alignment Nr	[(134, 217), (226, 252), (255, 267), (270, 292), (296, 305), (351, 360), (363, 387), (409, 451), (471, 481), (491, 519), (524, 577), (581, 606)]
Uniprot Nr	[(130, 213), (221, 247), (249, 261), (264, 286), (289, 298), (342, 351), (353, 376), (397, 439), (458, 468), (477, 503), (508, 560), (564, 589)]
Superposition	56819_superp_1.pdb.gz
Rasmol Script	56819_superp_1.rsm
View in Jmol
Region	2
Alignment Nr	[(65, 77), (226, 252), (409, 451), (471, 481), (491, 519), (524, 577), (581, 606)]
Uniprot Nr	[(62, 74), (221, 247), (397, 439), (458, 468), (477, 503), (508, 560), (564, 589)]
Superposition	56819_superp_2.pdb.gz
Rasmol Script	56819_superp_2.rsm
View in Jmol