| STRuster results: 54482 |
| SCOP 1.71 classification |
| Class: | Alpha and beta proteins (a+b) |
| Fold: | MHC antigen-recognition domain |
| Superfamily: | MHC antigen-recognition domain |
| Family: | MHC antigen-recognition domain |
| Protein: | Class I MHC, alpha-1 and alpha-2 domains |
| Species: | Mouse (Mus musculus), H-2DB |
| Species SCOP sunid: | 54482 |
| Set description |
| Number of entries: | 39 |
| SCOP Entries: | d1jpfa2 d1n5ad2 d1fg2a2 d1s7uj2 d1s7wa2 d1ffnd2 d1n3nc2 d1qlfa2 d1s7xa2 d1s7ug2 d1n3ng2 d1s7wj2 d1fg2j2 d1inqa2 d1n3na2 d1ffod2 d1s7ud2 d1ffpa2 d1ffoa2 d1s7xd2 d1s7wg2 d1n5ag2 d1fg2d2 d1bz9a2 d1jpga2 d1s7xg2 d1ce6a2 d1s7ua2 d1n5aj2 d1s7xj2 d1s7va2 d1fg2g2 d1n5aa2 d1ffpd2 d1s7vd2 d1n3ne2 d1ffna2 d1jufa2 d1s7wd2 |
| Alignment File: | 54482.alig |
| Aligned Sequences: | 54482_alig.fasta |
| Hierarchical clustering |
| Dissimilary matrix: | 54482_dissim_matrix.txt |
| Atom Distance Standard Deviation Plots |
| S matrix: Distance Standard Deviation |
| Higher resolution plot |
| S matrix |
| T matirx: Total Standard Deviation |
| Higher resolution plot |
| T matrix |
| R matrix: Relative Distance Standard Deviation |
| Higher resolution plot |
| R matrix |
| Hinges and Invariant Regions (T) |
| Hinges |
| Alignment Nr | [(15, 17), (134, 135), (175, 180)] |
| Uniprot Nr | [(40, 42), (159, 160), (200, 205)] |
| Invariant Regions |
| Region | 1 |
| Alignment Nr | [(0, 14), (18, 133), (136, 174)] |
| Uniprot Nr | [(25, 39), (43, 158), (161, 199)] |
| Superposition | 54482_superp_1.pdb.gz |
| Rasmol Script | 54482_superp_1.rsm |
| View in Jmol | |
