STRuster

 STRuster results: 53896

 SCOP 1.71 classification
Class: Alpha and beta proteins (a/b)
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Transferrin
Protein: Ovotransferrin
Species: Chicken (Gallus gallus)
Species SCOP sunid: 53896

 Set description
Number of entries: 8
SCOP Entries: d1tfaa_ d1iq7a_ d1ieja_ d1aiv_1 d1n04a1 d1n04a2 d1aiv_2 d1nfta_
Alignment File: 53896.alig
Aligned Sequences: 53896_alig.fasta

 Hierarchical clustering
Dendrogram

Dissimilary matrix: 53896_dissim_matrix.txt

 Atom Distance Standard Deviation Plots
 S matrix: Distance Standard Deviation
distance standard deviation
Higher resolution plot
S matrix

 T matirx: Total Standard Deviation
distance+sus standard deviation
Higher resolution plot
T matrix

 R matrix: Relative Distance Standard Deviation
relative distance standard deviation
Higher resolution plot
R matrix

 Hinges and Invariant Regions (T)
 Hinges
Alignment Nr[(0, 3), (82, 108), (129, 164), (186, 186), (234, 247), (287, 290), (316, 345), (395, 397), (416, 481), (492, 516), (569, 574), (586, 685)]
Uniprot Nr [(20, 23), (102, 128), (149, 184), (206, 206), (254, 267), (307, 310), (336, 365), (415, 417), (436, 501), (512, 536), (589, 594), (606, 705)]

 Invariant Regions
Region1
Alignment Nr[(4, 81), (248, 286), (291, 315), (482, 491), (517, 568), (575, 585)]
Uniprot Nr[(24, 101), (268, 306), (311, 335), (502, 511), (537, 588), (595, 605)]
Superposition-
 
Region2
Alignment Nr[(109, 128), (165, 185), (187, 233), (482, 491), (517, 568), (575, 585)]
Uniprot Nr[(129, 148), (185, 205), (207, 253), (502, 511), (537, 588), (595, 605)]
Superposition-
 
Region3
Alignment Nr[(4, 81), (248, 286), (291, 315), (346, 394), (398, 415)]
Uniprot Nr[(24, 101), (268, 306), (311, 335), (366, 414), (418, 435)]
Superposition-
 
Region4
Alignment Nr[(109, 128), (165, 185), (187, 233), (346, 394), (398, 415)]
Uniprot Nr[(129, 148), (185, 205), (207, 253), (366, 414), (418, 435)]
Superposition-