STRuster

 STRuster results: 51448

 SCOP 1.71 classification
Class: Alpha and beta proteins (a/b)
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain
Protein: Bacterial alpha-amylase
Species: Bacillus licheniformis
Species SCOP sunid: 51448

 Set description
Number of entries: 4
SCOP Entries: d1bli_2 d1bpl.1 d1ob0a2 d1vjs_2
Alignment File: 51448.alig
Aligned Sequences: 51448_alig.fasta

 Hierarchical clustering
Dendrogram

Dissimilary matrix: 51448_dissim_matrix.txt

 Atom Distance Standard Deviation Plots
 S matrix: Distance Standard Deviation
distance standard deviation
Higher resolution plot
S matrix

 T matirx: Total Standard Deviation
distance+sus standard deviation
Higher resolution plot
T matrix

 R matrix: Relative Distance Standard Deviation
relative distance standard deviation
Higher resolution plot
R matrix

 Hinges and Invariant Regions (T)
 Hinges
Alignment Nr[(175, 178), (190, 194)]
Uniprot Nr [(207, 210), (222, 226)]

 Invariant Regions
Region1
Alignment Nr[(0, 174), (179, 189), (195, 390)]
Uniprot Nr[(32, 206), (211, 221), (227, 422)]
Superposition51448_superp_1.pdb.gz
Rasmol Script51448_superp_1.rsm
View in Jmol