STRuster

 STRuster results: 49636

 SCOP 1.71 classification
Class: All beta proteins
Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily: Positive stranded ssRNA viruses
Family: Bromoviridae-like VP
Protein: Cucumovirus coat protein
Species: Cowpea chlorotic mottle virus
Species SCOP sunid: 49636

 Set description
Number of entries: 3
SCOP Entries: d1cwpc_ d1cwpa_ d1cwpb_
Alignment File: 49636.alig
Aligned Sequences: 49636_alig.fasta

 Hierarchical clustering
Dendrogram

Dissimilary matrix: 49636_dissim_matrix.txt

 Atom Distance Standard Deviation Plots
 S matrix: Distance Standard Deviation
distance standard deviation
Higher resolution plot
S matrix

 T matirx: Total Standard Deviation
distance+sus standard deviation
Higher resolution plot
T matrix

 R matrix: Relative Distance Standard Deviation
relative distance standard deviation
Higher resolution plot
R matrix

 Hinges and Invariant Regions (T)
 Hinges
Alignment Nr[(14, 15), (158, 163)]
Uniprot Nr [(40, 41), (184, 189)]

 Invariant Regions
Region1
Alignment Nr[(0, 13), (16, 157)]
Uniprot Nr[(26, 39), (42, 183)]
Superposition49636_superp_1.pdb.gz
Rasmol Script49636_superp_1.rsm
View in Jmol