| STRuster results: 49254 |
| SCOP 1.71 classification |
| Class: | All beta proteins |
| Fold: | Immunoglobulin-like beta-sandwich |
| Superfamily: | E set domains |
| Family: | NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain |
| Protein: | p65 subunit of NF-kappa B (NFKB), dimerization domain |
| Species: | Mouse (Mus musculus) |
| Species SCOP sunid: | 49254 |
| Set description |
| Number of entries: | 17 |
| SCOP Entries: | d1le9e1 d1oy3c_ d1le5e1 d1ramb1 d1bftb_ d1ikna1 d1rama1 d1le9a1 d1oy3b_ d1bfta_ d1k3zb_ d1vkxa1 d2ramb1 d1le5a1 d1k3za_ d2rama1 d1leia1 |
| Alignment File: | 49254.alig |
| Aligned Sequences: | 49254_alig.fasta |
| Hierarchical clustering |
| Dissimilary matrix: | 49254_dissim_matrix.txt |
| Atom Distance Standard Deviation Plots |
| S matrix: Distance Standard Deviation |
| Higher resolution plot |
| S matrix |
| T matirx: Total Standard Deviation |
| Higher resolution plot |
| T matrix |
| R matrix: Relative Distance Standard Deviation |
| Higher resolution plot |
| R matrix |
| Hinges and Invariant Regions (T) |
| Hinges |
| Alignment Nr | [(0, 1), (100, 117)] |
| Uniprot Nr | [(191, 192), (291, 308)] |
| Invariant Regions |
| Region | 1 |
| Alignment Nr | [(2, 99), (118, 134)] |
| Uniprot Nr | [(193, 290), (309, 325)] |
| Superposition | 49254_superp_1.pdb.gz |
| Rasmol Script | 49254_superp_1.rsm |
| View in Jmol | |
