STRuster

STRuster results: 118211

SCOP 1.71 classification

Class:	Multi-domain proteins (alpha and beta)
Fold:	Viral ssDNA binding protein
Superfamily:	Viral ssDNA binding protein
Family:	Viral ssDNA binding protein
Protein:	Infected cell protein 8, ICP8
Species:	Herpes simplex virus 1
Species SCOP sunid:	118211

Set description

Number of entries:	2
SCOP Entries:	d1urja_ d1urjb_
Alignment File:	118211.alig
Aligned Sequences:	118211_alig.fasta

Hierarchical clustering

Dissimilary matrix:

118211_dissim_matrix.txt

Atom Distance Standard Deviation Plots

S matrix: Distance Standard Deviation

Higher resolution plot

S matrix

T matirx: Total Standard Deviation

Higher resolution plot

T matrix

R matrix: Relative Distance Standard Deviation

Higher resolution plot

R matrix

Hinges and Invariant Regions (T)

Hinges

Alignment Nr	[(0, 2), (20, 21), (298, 299), (343, 343), (463, 465), (483, 488), (625, 636), (721, 731), (745, 754), (818, 851), (1055, 1056), (1075, 1089)]
Uniprot Nr	[(9, 11), (29, 30), (307, 308), (352, 352), (472, 474), (492, 497), (634, 645), (730, 740), (754, 763), (827, 860), (1064, 1065), (1084, 1098)]

Invariant Regions

Region	1
Alignment Nr	[(3, 19), (22, 297), (300, 342), (344, 462), (489, 624), (637, 720), (755, 817), (852, 1054)]
Uniprot Nr	[(12, 28), (31, 306), (309, 351), (353, 471), (498, 633), (646, 729), (764, 826), (861, 1063)]
Superposition	118211_superp_1.pdb.gz
Rasmol Script	118211_superp_1.rsm
View in Jmol
Region	2
Alignment Nr	[(3, 19), (22, 297), (300, 342), (344, 462), (637, 720), (732, 744), (755, 817), (852, 1054)]
Uniprot Nr	[(12, 28), (31, 306), (309, 351), (353, 471), (646, 729), (741, 753), (764, 826), (861, 1063)]
Superposition	118211_superp_2.pdb.gz
Rasmol Script	118211_superp_2.rsm
View in Jmol