STRuster

STRuster results: 103401

SCOP 1.71 classification

Class:	Multi-domain proteins (alpha and beta)
Fold:	DNA/RNA polymerases
Superfamily:	DNA/RNA polymerases
Family:	RNA-dependent RNA-polymerase
Protein:	Viral RNA polymerase
Species:	Bovine viral diarrhea virus
Species SCOP sunid:	103401

Set description

Number of entries:	6
SCOP Entries:	d1s4fb_ d1s49a_ d1s4fa_ d1s4fc_ d1s48a_ d1s4fd_
Alignment File:	103401.alig
Aligned Sequences:	103401_alig.fasta

Hierarchical clustering

Dissimilary matrix:

103401_dissim_matrix.txt

Atom Distance Standard Deviation Plots

S matrix: Distance Standard Deviation

Higher resolution plot

S matrix

T matirx: Total Standard Deviation

Higher resolution plot

T matrix

R matrix: Relative Distance Standard Deviation

Higher resolution plot

R matrix

Hinges and Invariant Regions (T)

Hinges

Alignment Nr	[(0, 39), (66, 81), (117, 144), (174, 195), (219, 230), (279, 280), (381, 382), (395, 401), (447, 457), (491, 498), (584, 599)]
Uniprot Nr	[(3361, 3399), (3425, 3440), (3476, 3503), (3533, 3554), (3577, 3588), (3637, 3638), (3735, 3735), (3748, 3753), (3797, 3807), (3840, 3847), (3933, 3948)]

Invariant Regions

Region	1
Alignment Nr	[(82, 116), (145, 173), (196, 218), (231, 278), (281, 380), (383, 394), (402, 446), (458, 490), (499, 583)]
Uniprot Nr	[(3441, 3475), (3504, 3532), (3555, 3576), (3589, 3636), (3639, 3734), (3736, 3747), (3754, 3796), (3808, 3839), (3848, 3932)]
Superposition	103401_superp_1.pdb.gz
Rasmol Script	103401_superp_1.rsm
View in Jmol
Region	2
Alignment Nr	[(40, 65), (82, 116), (231, 278), (281, 380), (383, 394), (402, 446), (458, 490), (499, 583)]
Uniprot Nr	[(3400, 3424), (3441, 3475), (3589, 3636), (3639, 3734), (3736, 3747), (3754, 3796), (3808, 3839), (3848, 3932)]
Superposition	103401_superp_2.pdb.gz
Rasmol Script	103401_superp_2.rsm
View in Jmol